Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| siroheme synthase | EQ875_02758 | Not Available | Positive | 3077047 - 3077808 | 27609.4 |
| hypothetical protein | EQ875_02759 | Not Available | Negative | 3077864 - 3080260 | 89104.0 |
| hypothetical protein | EQ875_02760 | Not Available | Negative | 3080500 - 3082152 | 63745.4 |
| putative aminoacrylate peracid reductase rutc | EQ875_02761 | Not Available | Negative | 3082547 - 3083812 | 45264.1 |
| Trna-ser | Not Available | Not Available | Positive | 3084273 - 3084363 | Not Available |
| hypothetical protein | EQ875_02763 | Not Available | Positive | 3084784 - 3084981 | 7458.73 |
| thioredoxin 2 | EQ875_02764 | Not Available | Positive | 3085252 - 3085686 | 16020.2 |
| hypothetical protein | EQ875_02765 | Not Available | Negative | 3085773 - 3086561 | 28782.7 |
| hypothetical protein | EQ875_02766 | Not Available | Positive | 3086754 - 3087635 | 32958.7 |
| lysophospholipase l2 | EQ875_02767 | Not Available | Negative | 3087723 - 3088694 | 37723.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


