Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_02708 | Not Available | Negative | 3024070 - 3024450 | 14936.6 |
| hypothetical protein | EQ875_02709 | Not Available | Negative | 3024447 - 3027341 | 107066.0 |
| actin cross-linking toxin vgrg1 | EQ875_02710 | Not Available | Negative | 3027359 - 3029398 | 75579.2 |
| major exported protein | EQ875_02711 | Not Available | Negative | 3029777 - 3030295 | 19127.6 |
| penicillin-binding protein 1b | EQ875_02712 | Not Available | Negative | 3030660 - 3033032 | 87768.3 |
| hypothetical protein | EQ875_02713 | Not Available | Positive | 3033271 - 3033735 | 18255.6 |
| molybdopterin adenylyltransferase | EQ875_02714 | Not Available | Negative | 3033858 - 3034391 | 19356.4 |
| hypothetical protein | EQ875_02715 | Not Available | Negative | 3034462 - 3034914 | 16858.9 |
| utp pyrophosphatase | EQ875_02716 | Not Available | Positive | 3035021 - 3035527 | 19822.4 |
| hypothetical protein | EQ875_02717 | Not Available | Positive | 3035598 - 3035948 | 13603.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


