Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-directed rna polymerase subunit beta | EQ875_02698 | Not Available | Negative | 3013436 - 3017461 | 149423.0 |
| 50s ribosomal protein l7/l12 | EQ875_02699 | Not Available | Negative | 3017687 - 3018052 | 12253.7 |
| 50s ribosomal protein l10 | EQ875_02700 | Not Available | Negative | 3018112 - 3018606 | 17516.1 |
| 50s ribosomal protein l1 | EQ875_02701 | Not Available | Negative | 3018830 - 3019534 | 24856.1 |
| 50s ribosomal protein l11 | EQ875_02702 | Not Available | Negative | 3019539 - 3019967 | 14777.0 |
| transcription termination/antitermination protein nusg | EQ875_02703 | Not Available | Negative | 3020093 - 3020638 | 20576.5 |
| protein translocase subunit sece | EQ875_02704 | Not Available | Negative | 3020650 - 3021033 | 13637.9 |
| elongation factor tu | EQ875_02705 | Not Available | Negative | 3021270 - 3022118 | 31035.5 |
| hypothetical protein | EQ875_02706 | Not Available | Negative | 3022315 - 3022989 | 25562.3 |
| hypothetical protein | EQ875_02707 | Not Available | Negative | 3023182 - 3023511 | 13205.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


