Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_02688 | Not Available | Negative | 3000327 - 3001019 | 25731.8 |
| dna-binding protein hu-alpha | EQ875_02689 | Not Available | Negative | 3001064 - 3001336 | 9445.35 |
| hypothetical protein | EQ875_02690 | Not Available | Positive | 3001566 - 3002621 | 39303.9 |
| branched-chain amino acid transport system 2 carrier protein | EQ875_02691 | Not Available | Negative | 3002730 - 3004052 | 46336.9 |
| hypothetical protein | EQ875_02692 | Not Available | Negative | 3004614 - 3005228 | 23473.3 |
| glyoxylate/hydroxypyruvate reductase a | EQ875_02693 | Not Available | Positive | 3005263 - 3006174 | 34344.9 |
| uroporphyrinogen decarboxylase | EQ875_02694 | Not Available | Negative | 3006325 - 3007392 | 39569.9 |
| nadh pyrophosphatase | EQ875_02695 | Not Available | Negative | 3007563 - 3008345 | 29390.5 |
| regulator of sigma d | EQ875_02696 | Not Available | Positive | 3008503 - 3008985 | 18491.9 |
| dna-directed rna polymerase subunit beta' | EQ875_02697 | Not Available | Negative | 3009119 - 3013336 | 155193.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


