Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| chitoporin | EQ875_00161 | Not Available | Positive | 167143 - 168555 | 51569.1 |
| hypothetical protein | EQ875_00162 | Not Available | Positive | 168699 - 168890 | 6537.88 |
| glutamate--trna ligase | EQ875_00163 | Not Available | Positive | 169078 - 170502 | 53509.7 |
| Trna-ala | Not Available | Not Available | Positive | 170665 - 170740 | Not Available |
| hypothetical protein | EQ875_00165 | Not Available | Negative | 170875 - 171411 | 18668.4 |
| Trna-arg | Not Available | Not Available | Positive | 171656 - 171732 | Not Available |
| hypothetical protein | EQ875_00167 | Not Available | Negative | 171792 - 172937 | 42707.9 |
| hypothetical protein | EQ875_00168 | Not Available | Positive | 173097 - 173732 | 23678.4 |
| hypothetical protein | EQ875_00169 | Not Available | Positive | 173739 - 174200 | 16552.6 |
| hypothetical protein | EQ875_00170 | Not Available | Negative | 174231 - 174656 | 16035.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


