Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosomal protein l11 methyltransferase | EQ875_02678 | Not Available | Positive | 2989407 - 2990291 | 32233.2 |
| putative trna-dihydrouridine synthase | EQ875_02679 | Not Available | Positive | 2990468 - 2991433 | 35734.0 |
| dna-binding protein fis | EQ875_02680 | Not Available | Positive | 2991456 - 2991752 | 11111.4 |
| protein maly | EQ875_02681 | Not Available | Negative | 2991851 - 2993023 | 44157.6 |
| pts system maltose-specific eiicb component | EQ875_02682 | Not Available | Negative | 2993076 - 2994653 | 55648.1 |
| maltose regulon regulatory protein mali | EQ875_02683 | Not Available | Positive | 2994973 - 2996019 | 37880.9 |
| pyrimidine/purine nucleoside phosphorylase | EQ875_02684 | Not Available | Negative | 2996169 - 2996450 | 10120.8 |
| hth-type transcriptional regulator zntr | EQ875_02685 | Not Available | Negative | 2996567 - 2997052 | 17983.5 |
| bifunctional purine biosynthesis protein purh | EQ875_02686 | Not Available | Positive | 2997276 - 2998874 | 57861.6 |
| phosphoribosylamine--glycine ligase | EQ875_02687 | Not Available | Positive | 2998912 - 3000198 | 45805.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


