Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 60 kda chaperonin | EQ875_02658 | Not Available | Negative | 2964858 - 2966501 | 57415.2 |
| 10 kda chaperonin | EQ875_02659 | Not Available | Negative | 2966543 - 2966833 | 10310.4 |
| multidrug export protein mepa | EQ875_02660 | Not Available | Positive | 2967052 - 2968410 | 48805.4 |
| hypothetical protein | EQ875_02661 | Not Available | Negative | 2968539 - 2969063 | 18816.0 |
| aspartate ammonia-lyase | EQ875_02662 | Not Available | Positive | 2969528 - 2970988 | 52817.7 |
| anaerobic c4-dicarboxylate transporter dcua | EQ875_02663 | Not Available | Positive | 2971099 - 2972406 | 45464.9 |
| hth-type transcriptional regulator dmlr | EQ875_02664 | Not Available | Positive | 2972761 - 2973678 | 34445.3 |
| transcriptional regulatory protein degu | EQ875_02665 | Not Available | Positive | 2973804 - 2974433 | 22999.1 |
| hypothetical protein | EQ875_02666 | Not Available | Positive | 2974526 - 2975158 | 22636.7 |
| hypothetical protein | EQ875_02667 | Not Available | Positive | 2975348 - 2975614 | 10174.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


