Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gtpase hflx | EQ875_02626 | Not Available | Negative | 2936533 - 2937822 | 48505.2 |
| rna-binding protein hfq | EQ875_02627 | Not Available | Negative | 2937849 - 2938112 | 9832.92 |
| trna dimethylallyltransferase | EQ875_02628 | Not Available | Negative | 2938199 - 2939101 | 33571.2 |
| dna mismatch repair protein mutl | EQ875_02629 | Not Available | Negative | 2939138 - 2941201 | 76758.1 |
| hypothetical protein | EQ875_02630 | Not Available | Negative | 2941204 - 2942937 | 62807.8 |
| trna threonylcarbamoyladenosine biosynthesis protein tsae | EQ875_02631 | Not Available | Negative | 2942943 - 2943407 | 17565.9 |
| epoxyqueuosine reductase | EQ875_02632 | Not Available | Positive | 2943862 - 2944995 | 42623.4 |
| hypothetical protein | EQ875_02633 | Not Available | Negative | 2945019 - 2945600 | 21312.3 |
| Trna-gly | Not Available | Not Available | Positive | 2946875 - 2946950 | Not Available |
| Trna-gly | Not Available | Not Available | Positive | 2946986 - 2947061 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


