Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosomal protein s6 | EQ875_02616 | Not Available | Negative | 2925904 - 2926290 | 14839.7 |
| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb | EQ875_02617 | Not Available | Negative | 2926513 - 2927244 | 26215.1 |
| ribonuclease r | EQ875_02618 | Not Available | Negative | 2927260 - 2929845 | 97654.9 |
| hth-type transcriptional repressor nsrr | EQ875_02619 | Not Available | Negative | 2929982 - 2930410 | 15645.2 |
| flavohemoprotein | EQ875_02620 | Not Available | Positive | 2930516 - 2931703 | 44542.8 |
| hypothetical protein | EQ875_02621 | Not Available | Negative | 2931767 - 2932396 | 23900.8 |
| adenylosuccinate synthetase | EQ875_02622 | Not Available | Negative | 2932588 - 2933904 | 47918.5 |
| hypothetical protein | EQ875_02623 | Not Available | Negative | 2934021 - 2934215 | 6909.68 |
| modulator of ftsh protease hflc | EQ875_02624 | Not Available | Negative | 2934303 - 2935313 | 38159.6 |
| modulator of ftsh protease hflk | EQ875_02625 | Not Available | Negative | 2935316 - 2936479 | 42527.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


