Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| serine--trna ligase | EQ875_02556 | Not Available | Positive | 2878830 - 2880140 | 49030.4 |
| hypothetical protein | EQ875_02557 | Not Available | Negative | 2880189 - 2881058 | 34148.8 |
| hypothetical protein | EQ875_02558 | Not Available | Negative | 2881199 - 2881558 | 13739.8 |
| 3'(2'),5'-bisphosphate nucleotidase cysq | EQ875_02559 | Not Available | Negative | 2882293 - 2883033 | 27071.5 |
| adenylyl-sulfate kinase | EQ875_02560 | Not Available | Negative | 2883051 - 2883668 | 23207.9 |
| hypothetical protein | EQ875_02561 | Not Available | Negative | 2883683 - 2885419 | 62103.9 |
| sulfate adenylyltransferase subunit 1 | EQ875_02562 | Not Available | Negative | 2885426 - 2886850 | 52517.6 |
| sulfate adenylyltransferase subunit 2 | EQ875_02563 | Not Available | Negative | 2886862 - 2887770 | 34993.9 |
| siroheme synthase | EQ875_02564 | Not Available | Negative | 2887783 - 2889192 | 51030.9 |
| 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | EQ875_02565 | Not Available | Positive | 2889593 - 2891560 | 72230.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


