Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| translation initiation factor if-1 | EQ875_02546 | Not Available | Negative | 2864934 - 2865152 | 8219.13 |
| aspartate/glutamate leucyltransferase | EQ875_02547 | Not Available | Negative | 2865352 - 2866035 | 26805.8 |
| leucyl/phenylalanyl-trna--protein transferase | EQ875_02548 | Not Available | Negative | 2866048 - 2866761 | 26948.0 |
| putative abc transporter atp-binding protein | EQ875_02549 | Not Available | Negative | 2866951 - 2868672 | 63468.8 |
| atp-binding/permease protein cydd | EQ875_02550 | Not Available | Negative | 2868665 - 2870446 | 65445.8 |
| thioredoxin reductase | EQ875_02551 | Not Available | Negative | 2870595 - 2871554 | 34556.0 |
| hypothetical protein | EQ875_02552 | Not Available | Positive | 2872095 - 2872718 | 24200.9 |
| hypothetical protein | EQ875_02553 | Not Available | Positive | 2873173 - 2876451 | 118297.0 |
| outer-membrane lipoprotein carrier protein | EQ875_02554 | Not Available | Positive | 2876584 - 2877195 | 22648.7 |
| replication-associated recombination protein a | EQ875_02555 | Not Available | Positive | 2877302 - 2878645 | 49878.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


