Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nitric oxide reductase flrd-nad(+) reductase | EQ875_02536 | Not Available | Negative | 2852831 - 2853982 | 41449.9 |
| anaerobic nitric oxide reductase flavorubredoxin | EQ875_02537 | Not Available | Negative | 2854007 - 2855485 | 55100.3 |
| adenylosuccinate lyase | EQ875_02538 | Not Available | Negative | 2855749 - 2857116 | 51290.3 |
| high frequency lysogenization protein hfld | EQ875_02539 | Not Available | Negative | 2857199 - 2857819 | 22931.1 |
| pp_02487 | EQ875_02540 | Not Available | Negative | 2857835 - 2858947 | Not Available |
| ribosomal large subunit pseudouridine synthase e | EQ875_02541 | Not Available | Negative | 2859224 - 2859871 | 24646.9 |
| isocitrate dehydrogenase | EQ875_02542 | Not Available | Positive | 2860014 - 2861267 | 45748.9 |
| cold shock-like protein cspd | EQ875_02543 | Not Available | Negative | 2861693 - 2861914 | 8084.45 |
| atp-dependent clp protease adapter protein clps | EQ875_02544 | Not Available | Positive | 2862172 - 2862492 | 12245.8 |
| atp-dependent clp protease atp-binding subunit clpa | EQ875_02545 | Not Available | Positive | 2862537 - 2864801 | 83627.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


