Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| electron transport complex subunit rsxg | EQ875_02506 | Not Available | Negative | 2823906 - 2824538 | 22732.4 |
| electron transport complex subunit rsxd | EQ875_02507 | Not Available | Negative | 2824547 - 2825596 | 37806.1 |
| electron transport complex subunit rsxc | EQ875_02508 | Not Available | Negative | 2825599 - 2828157 | 92055.5 |
| electron transport complex subunit rsxb | EQ875_02509 | Not Available | Negative | 2828160 - 2828738 | 20288.6 |
| electron transport complex subunit rsxa | EQ875_02510 | Not Available | Negative | 2828740 - 2829321 | 20848.6 |
| peptidase e | EQ875_02511 | Not Available | Positive | 2829702 - 2830439 | 27082.5 |
| hypothetical protein | EQ875_02512 | Not Available | Negative | 2830960 - 2831085 | 4911.83 |
| hypothetical protein | EQ875_02513 | Not Available | Positive | 2831206 - 2831640 | 16024.0 |
| uvrabc system protein b | EQ875_02514 | Not Available | Positive | 2831839 - 2833866 | 76692.5 |
| luminescence regulatory protein luxo | EQ875_02515 | Not Available | Positive | 2834215 - 2835654 | 52789.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


