Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_02486 | Not Available | Positive | 2799694 - 2800059 | 13973.2 |
| flavodoxin | EQ875_02487 | Not Available | Negative | 2800216 - 2800704 | 17823.5 |
| pyruvate-flavodoxin oxidoreductase | EQ875_02488 | Not Available | Negative | 2800716 - 2804273 | 130592.0 |
| hydroxylamine reductase | EQ875_02489 | Not Available | Negative | 2804434 - 2805777 | 48686.5 |
| carboxypeptidase g2 | EQ875_02490 | Not Available | Negative | 2806043 - 2807167 | 40114.9 |
| inner membrane protein yjig | EQ875_02491 | Not Available | Negative | 2807252 - 2807713 | 16005.5 |
| hypothetical protein | EQ875_02492 | Not Available | Negative | 2807713 - 2808447 | 26017.3 |
| malate-2h(+)/na(+)-lactate antiporter | EQ875_02493 | Not Available | Negative | 2808994 - 2810442 | 51163.7 |
| aspartate-semialdehyde dehydrogenase 1 | EQ875_02494 | Not Available | Positive | 2811148 - 2812266 | 40417.7 |
| superoxide dismutase | EQ875_02495 | Not Available | Negative | 2812460 - 2813044 | 21498.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


