Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative nad(p)h nitroreductase ydja | EQ875_02476 | Not Available | Positive | 2787999 - 2788547 | 19686.7 |
| selenide, water dikinase | EQ875_02477 | Not Available | Positive | 2788748 - 2789782 | 36335.6 |
| trna 2-selenouridine synthase | EQ875_02478 | Not Available | Positive | 2789782 - 2790876 | 41525.6 |
| hypothetical protein | EQ875_02479 | Not Available | Negative | 2790970 - 2791809 | 31509.9 |
| dna topoisomerase 3 | EQ875_02480 | Not Available | Positive | 2791973 - 2793961 | 73732.6 |
| hypothetical protein | EQ875_02481 | Not Available | Negative | 2794003 - 2795619 | 62312.0 |
| hypothetical protein | EQ875_02482 | Not Available | Positive | 2795870 - 2796130 | 10256.9 |
| inner membrane protein yejm | EQ875_02483 | Not Available | Negative | 2796171 - 2798039 | 71373.1 |
| hypothetical protein | EQ875_02484 | Not Available | Negative | 2798087 - 2798305 | 7888.57 |
| nucleoid-associated protein yejk | EQ875_02485 | Not Available | Positive | 2798382 - 2799395 | 38361.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


