Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_02466 | Not Available | Negative | 2775032 - 2776966 | 74384.1 |
| hypothetical protein | EQ875_02467 | Not Available | Positive | 2777627 - 2778007 | 13569.4 |
| putative glucose-6-phosphate 1-epimerase | EQ875_02468 | Not Available | Negative | 2778097 - 2778972 | 32493.2 |
| glyceraldehyde-3-phosphate dehydrogenase a | EQ875_02469 | Not Available | Negative | 2779298 - 2780293 | 35205.8 |
| peptide methionine sulfoxide reductase msrb | EQ875_02470 | Not Available | Positive | 2780631 - 2781026 | 14801.1 |
| hypothetical protein | EQ875_02471 | Not Available | Negative | 2781101 - 2781952 | 33245.8 |
| hypothetical protein | EQ875_02472 | Not Available | Positive | 2782156 - 2782440 | 10819.0 |
| l-asparaginase 1 | EQ875_02473 | Not Available | Negative | 2782517 - 2783530 | 36906.5 |
| protease 4 | EQ875_02474 | Not Available | Negative | 2783797 - 2785650 | 67430.6 |
| 2,4-dienoyl-coa reductase | EQ875_02475 | Not Available | Positive | 2785921 - 2787933 | 73311.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


