Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 5s ribosomal rna | Not Available | Not Available | Positive | 149146 - 149256 | Not Available |
| ferredoxin-type protein napf | EQ875_00142 | Not Available | Positive | 149197 - 149691 | 18331.6 |
| hypothetical protein | EQ875_00143 | Not Available | Positive | 149694 - 149966 | 10218.0 |
| periplasmic nitrate reductase | EQ875_00144 | Not Available | Positive | 149963 - 152449 | 93293.3 |
| hypothetical protein | EQ875_00145 | Not Available | Positive | 152521 - 153036 | 18740.5 |
| cytochrome c-type protein napc | EQ875_00146 | Not Available | Positive | 153051 - 153626 | 21759.1 |
| hypothetical protein | EQ875_00147 | Not Available | Positive | 153641 - 153778 | 4890.16 |
| hypothetical protein | EQ875_00148 | Not Available | Negative | 153826 - 153999 | 6709.3 |
| hypothetical protein | EQ875_00149 | Not Available | Negative | 154157 - 154603 | 16867.1 |
| hypothetical protein | EQ875_00150 | Not Available | Negative | 154616 - 154951 | 12980.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


