Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase | EQ875_02446 | Not Available | Positive | 2753773 - 2754597 | 30320.3 |
| o-succinylbenzoate synthase | EQ875_02447 | Not Available | Positive | 2754650 - 2755624 | 35758.9 |
| 2-succinylbenzoate--coa ligase | EQ875_02448 | Not Available | Positive | 2755612 - 2757042 | 53008.5 |
| lysophospholipid transporter lplt | EQ875_02449 | Not Available | Negative | 2757127 - 2759004 | 69606.6 |
| hypothetical protein | EQ875_02450 | Not Available | Negative | 2759019 - 2759615 | 22738.1 |
| hypothetical protein | EQ875_02451 | Not Available | Positive | 2760209 - 2761066 | 31388.6 |
| hypothetical protein | EQ875_02452 | Not Available | Positive | 2761319 - 2761564 | 8869.69 |
| hypothetical protein | EQ875_02453 | Not Available | Negative | 2761584 - 2761838 | 8966.94 |
| hypothetical protein | EQ875_02454 | Not Available | Positive | 2762104 - 2762541 | 16941.7 |
| hypothetical protein | EQ875_02455 | Not Available | Positive | 2762718 - 2762852 | 5133.46 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


