Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidyl-prolyl cis-trans isomerase d | EQ875_02436 | Not Available | Positive | 2742722 - 2744617 | 70197.4 |
| hypothetical protein | EQ875_02437 | Not Available | Positive | 2744780 - 2745067 | 10446.8 |
| putative protein year | EQ875_02438 | Not Available | Negative | 2745152 - 2745490 | 12709.9 |
| hypothetical protein | EQ875_02439 | Not Available | Negative | 2745577 - 2746134 | 20364.0 |
| hypothetical protein | EQ875_02440 | Not Available | Positive | 2746144 - 2746764 | 23222.9 |
| deoxyguanosinetriphosphate triphosphohydrolase-like protein | EQ875_02441 | Not Available | Negative | 2746969 - 2748297 | 50839.9 |
| 5'-deoxynucleotidase yfbr | EQ875_02442 | Not Available | Negative | 2748297 - 2748881 | 22276.8 |
| glutamate-pyruvate aminotransferase alaa | EQ875_02443 | Not Available | Negative | 2748991 - 2750205 | 45463.1 |
| isochorismate synthase menf | EQ875_02444 | Not Available | Positive | 2750647 - 2752041 | 52547.5 |
| 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase | EQ875_02445 | Not Available | Positive | 2752023 - 2753789 | 63513.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


