Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| na(+)/h(+) antiporter nhap | EQ875_02424 | Not Available | Positive | 2731155 - 2732435 | 46540.9 |
| homoserine o-succinyltransferase | EQ875_02425 | Not Available | Negative | 2732565 - 2733506 | 36322.1 |
| Trna-thr | Not Available | Not Available | Positive | 2733803 - 2733878 | Not Available |
| bifunctional protein fold protein | EQ875_02429 | Not Available | Negative | 2734179 - 2735039 | 30813.4 |
| Trna-arg | Not Available | Not Available | Positive | 2735297 - 2735373 | Not Available |
| trigger factor | EQ875_02431 | Not Available | Positive | 2735885 - 2737183 | 47506.8 |
| atp-dependent clp protease proteolytic subunit | EQ875_02432 | Not Available | Positive | 2737289 - 2737912 | 22932.6 |
| atp-dependent clp protease atp-binding subunit clpx | EQ875_02433 | Not Available | Positive | 2738026 - 2739306 | 46802.0 |
| lon protease | EQ875_02434 | Not Available | Positive | 2739532 - 2741895 | 87858.6 |
| dna-binding protein hu-beta | EQ875_02435 | Not Available | Positive | 2742096 - 2742368 | 9362.11 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


