Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_02414 | Not Available | Negative | 2713931 - 2714254 | 11745.3 |
| hypothetical protein | EQ875_02415 | Not Available | Negative | 2714247 - 2714882 | 23914.1 |
| hypothetical protein | EQ875_02416 | Not Available | Negative | 2714879 - 2716330 | 54333.5 |
| rnase e specificity factor csrd | EQ875_02417 | Not Available | Negative | 2716495 - 2718435 | 73233.7 |
| single-stranded dna-binding protein | EQ875_02418 | Not Available | Negative | 2718586 - 2719134 | 20102.5 |
| uvrabc system protein a | EQ875_02419 | Not Available | Positive | 2719401 - 2722226 | 104151.0 |
| hypothetical protein | EQ875_02420 | Not Available | Positive | 2722379 - 2724130 | 66643.0 |
| (s)-ureidoglycine--glyoxylate transaminase | EQ875_02421 | Not Available | Negative | 2724184 - 2725302 | 40615.0 |
| lysine-sensitive aspartokinase 3 | EQ875_02422 | Not Available | Positive | 2725853 - 2727232 | 49470.6 |
| methionine synthase | EQ875_02423 | Not Available | Negative | 2727293 - 2730958 | 135230.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


