Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| deaminated glutathione amidase | EQ875_02394 | Not Available | Negative | 2689409 - 2690230 | 30563.7 |
| hypothetical protein | EQ875_02395 | Not Available | Negative | 2690258 - 2694142 | 143137.0 |
| ribonuclease g | EQ875_02396 | Not Available | Negative | 2694156 - 2695625 | 55269.4 |
| maf-like protein yhde | EQ875_02397 | Not Available | Negative | 2695634 - 2696215 | 21446.6 |
| rod shape-determining protein mred | EQ875_02398 | Not Available | Negative | 2696286 - 2696774 | 18766.8 |
| cell shape-determining protein mrec | EQ875_02399 | Not Available | Negative | 2696764 - 2697726 | 35432.9 |
| rod shape-determining protein mreb | EQ875_02400 | Not Available | Negative | 2697768 - 2698811 | 36958.5 |
| hypothetical protein | EQ875_02401 | Not Available | Negative | 2699170 - 2703279 | 151555.0 |
| hypothetical protein | EQ875_02402 | Not Available | Negative | 2703279 - 2703704 | 15777.1 |
| hypothetical protein | EQ875_02403 | Not Available | Negative | 2703694 - 2704419 | 26543.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


