Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipopolysaccharide export system atp-binding protein lptb | EQ875_02384 | Not Available | Positive | 2679962 - 2680687 | 26918.6 |
| rna polymerase sigma-54 factor | EQ875_02385 | Not Available | Positive | 2680759 - 2682222 | 54876.9 |
| ribosome hibernation promoting factor | EQ875_02386 | Not Available | Positive | 2682259 - 2682546 | 10868.0 |
| nitrogen regulatory protein | EQ875_02387 | Not Available | Positive | 2682549 - 2682998 | 16466.7 |
| rnase adapter protein rapz | EQ875_02388 | Not Available | Positive | 2683035 - 2683886 | 32292.8 |
| phosphocarrier protein npr | EQ875_02389 | Not Available | Positive | 2683883 - 2684155 | 9644.51 |
| magnesium transporter mgte | EQ875_02390 | Not Available | Positive | 2684416 - 2685774 | 49198.4 |
| metalloprotease pmba | EQ875_02391 | Not Available | Negative | 2685870 - 2687213 | 48213.1 |
| hypothetical protein | EQ875_02392 | Not Available | Positive | 2687325 - 2687849 | 20684.2 |
| metalloprotease tldd | EQ875_02393 | Not Available | Negative | 2687948 - 2689396 | 51098.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


