Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome b | EQ875_02364 | Not Available | Negative | 2663377 - 2664642 | 48152.6 |
| ubiquinol-cytochrome c reductase iron-sulfur subunit | EQ875_02365 | Not Available | Negative | 2664642 - 2665235 | 21164.2 |
| 30s ribosomal protein s9 | EQ875_02366 | Not Available | Negative | 2665650 - 2666042 | 14798.1 |
| 50s ribosomal protein l13 | EQ875_02367 | Not Available | Negative | 2666058 - 2666486 | 15853.5 |
| cell division protein zape | EQ875_02368 | Not Available | Negative | 2666755 - 2667858 | 42902.8 |
| inner membrane protein yhcb | EQ875_02369 | Not Available | Positive | 2668008 - 2668475 | 17324.4 |
| periplasmic serine endoprotease degp | EQ875_02370 | Not Available | Positive | 2668589 - 2669956 | 48067.3 |
| serine endoprotease degs | EQ875_02371 | Not Available | Positive | 2670105 - 2671220 | 39662.0 |
| udp-n-acetylglucosamine 1-carboxyvinyltransferase | EQ875_02372 | Not Available | Negative | 2671327 - 2672583 | 44161.5 |
| acid stress protein ibag | EQ875_02373 | Not Available | Negative | 2672594 - 2672848 | 9341.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


