Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sigma factor-binding protein crl | EQ875_00133 | Not Available | Positive | 140957 - 141352 | 15441.1 |
| glutamate 5-kinase | EQ875_00134 | Not Available | Positive | 141571 - 142719 | 40844.6 |
| gamma-glutamyl phosphate reductase | EQ875_00135 | Not Available | Positive | 142812 - 144068 | 45113.2 |
| hypothetical protein | EQ875_00136 | Not Available | Negative | 144117 - 144323 | 7960.62 |
| succinyl-diaminopimelate desuccinylase | EQ875_00137 | Not Available | Negative | 144403 - 145536 | 41063.8 |
| protein yffb | EQ875_00138 | Not Available | Negative | 145547 - 145906 | 13772.6 |
| hypothetical protein | EQ875_00139 | Not Available | Positive | 146240 - 146518 | 10771.0 |
| nitrate/nitrite response regulator protein narl | EQ875_00140 | Not Available | Negative | 146600 - 147226 | 22651.3 |
| 5s ribosomal rna | Not Available | Not Available | Positive | 148893 - 149002 | Not Available |
| nitrate/nitrite sensor protein narq | EQ875_00141 | Not Available | Negative | 147219 - 148925 | 64413.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


