Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cell division protein ftsq | EQ875_02344 | Not Available | Negative | 2641840 - 2642631 | 29992.3 |
| udp-n-acetylmuramate--l-alanine ligase | EQ875_02345 | Not Available | Negative | 2642904 - 2644364 | 52730.2 |
| udp-n-acetylglucosamine--n-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol n-acetylglucosamine transferase | EQ875_02346 | Not Available | Negative | 2644380 - 2645444 | 37902.1 |
| putative peptidoglycan glycosyltransferase ftsw | EQ875_02347 | Not Available | Negative | 2645431 - 2646735 | 47915.5 |
| udp-n-acetylmuramoylalanine--d-glutamate ligase | EQ875_02348 | Not Available | Negative | 2646729 - 2648072 | 47742.2 |
| phospho-n-acetylmuramoyl-pentapeptide- transferase | EQ875_02349 | Not Available | Negative | 2648076 - 2649158 | 40260.5 |
| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligase | EQ875_02350 | Not Available | Negative | 2649155 - 2650537 | 49011.7 |
| udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligase | EQ875_02351 | Not Available | Negative | 2650534 - 2652051 | 53999.2 |
| peptidoglycan d,d-transpeptidase ftsi | EQ875_02352 | Not Available | Negative | 2652076 - 2653806 | 63022.6 |
| cell division protein ftsl | EQ875_02353 | Not Available | Negative | 2653809 - 2654132 | 12112.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


