Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type 4 prepilin-like proteins leader peptide-processing enzyme | EQ875_02334 | Not Available | Positive | 2631096 - 2631974 | 32574.9 |
| dephospho-coa kinase | EQ875_02335 | Not Available | Positive | 2631976 - 2632578 | 22227.8 |
| cell division protein zapd | EQ875_02336 | Not Available | Positive | 2632646 - 2633383 | 29079.1 |
| dna gyrase inhibitor yacg | EQ875_02337 | Not Available | Positive | 2633392 - 2633601 | 7799.11 |
| 8-oxo-dgtp diphosphatase | EQ875_02338 | Not Available | Positive | 2633835 - 2634242 | 14976.8 |
| protein translocase subunit seca | EQ875_02339 | Not Available | Negative | 2634439 - 2637159 | 103539.0 |
| hypothetical protein | EQ875_02340 | Not Available | Positive | 2637630 - 2638100 | 17352.0 |
| udp-3-o-acyl-n-acetylglucosamine deacetylase | EQ875_02341 | Not Available | Negative | 2638205 - 2639122 | 33870.6 |
| cell division protein ftsz | EQ875_02342 | Not Available | Negative | 2639397 - 2640545 | 40011.1 |
| cell division protein ftsa | EQ875_02343 | Not Available | Negative | 2640581 - 2641840 | 45286.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


