Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_02324 | Not Available | Positive | 2616486 - 2618552 | 74175.6 |
| hypothetical protein | EQ875_02325 | Not Available | Positive | 2618565 - 2619110 | 19465.8 |
| dihydrolipoyl dehydrogenase | EQ875_02326 | Not Available | Negative | 2619194 - 2620624 | 50912.8 |
| dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex | EQ875_02327 | Not Available | Negative | 2620802 - 2622667 | 64761.5 |
| pyruvate dehydrogenase e1 component | EQ875_02328 | Not Available | Negative | 2622680 - 2625340 | 99312.9 |
| pyruvate dehydrogenase complex repressor | EQ875_02329 | Not Available | Negative | 2625421 - 2626194 | 29662.5 |
| 1,6-anhydro-n-acetylmuramyl-l-alanine amidase ampd | EQ875_02330 | Not Available | Negative | 2626554 - 2627132 | 21538.3 |
| fimbrial protein | EQ875_02331 | Not Available | Positive | 2627535 - 2627930 | 13006.6 |
| type ii secretion system protein e | EQ875_02332 | Not Available | Positive | 2627930 - 2629621 | 62554.9 |
| type ii secretion system protein f | EQ875_02333 | Not Available | Positive | 2629687 - 2630913 | 45107.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


