Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_02314 | Not Available | Negative | 2602351 - 2603976 | 60399.1 |
| iron uptake protein a1 | EQ875_02315 | Not Available | Negative | 2604132 - 2605145 | 37682.9 |
| ammonia channel | EQ875_02316 | Not Available | Negative | 2605337 - 2606566 | 43027.5 |
| nitrogen regulatory protein p-ii | EQ875_02317 | Not Available | Negative | 2606630 - 2606968 | 12348.0 |
| hypothetical protein | EQ875_02318 | Not Available | Negative | 2607151 - 2607519 | 14278.5 |
| carbohydrate diacid regulator | EQ875_02319 | Not Available | Positive | 2607575 - 2608732 | 43715.1 |
| high-affinity gluconate transporter | EQ875_02320 | Not Available | Positive | 2608864 - 2610129 | 42371.6 |
| glycerate 2-kinase | EQ875_02321 | Not Available | Positive | 2610140 - 2611273 | 38904.9 |
| aconitate hydratase b | EQ875_02322 | Not Available | Negative | 2611383 - 2613980 | 93660.2 |
| methyl-accepting chemotaxis protein mcph | EQ875_02323 | Not Available | Positive | 2614381 - 2616294 | 69521.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


