Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| poly(a) polymerase i | EQ875_02304 | Not Available | Positive | 2593583 - 2595031 | 56178.1 |
| 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase | EQ875_02305 | Not Available | Positive | 2595028 - 2595513 | 17917.5 |
| 3-methyl-2-oxobutanoate hydroxymethyltransferase | EQ875_02306 | Not Available | Positive | 2595539 - 2596333 | 28755.8 |
| pantothenate synthetase | EQ875_02307 | Not Available | Positive | 2596343 - 2597233 | 33295.2 |
| inner membrane transport permease yadh | EQ875_02308 | Not Available | Negative | 2597349 - 2598119 | 28091.1 |
| putative abc transporter atp-binding protein yadg | EQ875_02309 | Not Available | Negative | 2598116 - 2599039 | 34345.7 |
| carbonic anhydrase 2 | EQ875_02310 | Not Available | Positive | 2599138 - 2599809 | 24922.7 |
| hypoxanthine phosphoribosyltransferase | EQ875_02311 | Not Available | Negative | 2599884 - 2600420 | 20450.6 |
| hth-type transcriptional regulator luxr | EQ875_02312 | Not Available | Positive | 2600641 - 2601237 | 22813.3 |
| fe(3+) ions import atp-binding protein fbpc 2 | EQ875_02313 | Not Available | Negative | 2601311 - 2602351 | 38139.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


