Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative multidrug export atp-binding/permease protein | EQ875_02284 | Not Available | Positive | 2571318 - 2573168 | 68236.3 |
| hypothetical protein | EQ875_02285 | Not Available | Negative | 2573252 - 2573665 | 15548.7 |
| metalloprotease stce | EQ875_02286 | Not Available | Negative | 2573851 - 2576691 | 104517.0 |
| phosphoethanolamine transferase epta | EQ875_02287 | Not Available | Negative | 2577013 - 2578617 | 60500.4 |
| inner membrane protein yccs | EQ875_02288 | Not Available | Positive | 2578898 - 2580985 | 78761.3 |
| hypothetical protein | EQ875_02289 | Not Available | Negative | 2581152 - 2581631 | 18815.5 |
| nadh oxidase | EQ875_02290 | Not Available | Negative | 2581733 - 2582836 | 41419.4 |
| peptidyl-prolyl cis-trans isomerase b | EQ875_02291 | Not Available | Positive | 2583183 - 2583680 | 18137.6 |
| hypothetical protein | EQ875_02292 | Not Available | Negative | 2583738 - 2584103 | 14764.1 |
| hypothetical protein | EQ875_02293 | Not Available | Negative | 2584126 - 2584602 | 17966.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


