Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_02274 | Not Available | Negative | 2561137 - 2561373 | 8847.85 |
| hypothetical protein | EQ875_02275 | Not Available | Negative | 2561859 - 2562413 | 20896.1 |
| hypothetical protein | EQ875_02276 | Not Available | Negative | 2562648 - 2562848 | 7479.94 |
| hypothetical protein | EQ875_02277 | Not Available | Negative | 2562975 - 2563250 | 10121.9 |
| hypothetical protein | EQ875_02278 | Not Available | Negative | 2563642 - 2564085 | 16223.0 |
| hypothetical protein | EQ875_02279 | Not Available | Negative | 2564105 - 2565529 | 53415.1 |
| hypothetical protein | EQ875_02280 | Not Available | Negative | 2565581 - 2566462 | 33485.8 |
| hypothetical protein | EQ875_02281 | Not Available | Positive | 2566891 - 2567238 | 13069.9 |
| catalase-peroxidase | EQ875_02282 | Not Available | Negative | 2567436 - 2569622 | 81144.0 |
| agmatinase | EQ875_02283 | Not Available | Positive | 2570229 - 2571152 | 33475.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


