Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-acetyl-d-glucosamine kinase | EQ875_02254 | Not Available | Negative | 2537201 - 2538112 | 32636.1 |
| hypothetical protein | EQ875_02255 | Not Available | Negative | 2538241 - 2538963 | 27836.4 |
| hypothetical protein | EQ875_02256 | Not Available | Negative | 2539092 - 2539436 | 12971.3 |
| hypothetical protein | EQ875_02257 | Not Available | Positive | 2539610 - 2539966 | 13554.6 |
| hypothetical protein | EQ875_02258 | Not Available | Positive | 2540173 - 2540643 | 17611.5 |
| miniconductance mechanosensitive channel ybdg | EQ875_02259 | Not Available | Positive | 2540761 - 2541993 | 46324.0 |
| glycine betaine transporter 2 | EQ875_02260 | Not Available | Negative | 2542107 - 2543660 | 55052.1 |
| hypothetical protein | EQ875_02261 | Not Available | Positive | 2544147 - 2545685 | 58270.6 |
| hypothetical protein | EQ875_02262 | Not Available | Positive | 2545682 - 2546992 | 47954.0 |
| inner membrane protein rclc | EQ875_02263 | Not Available | Positive | 2547174 - 2547668 | 18173.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


