Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| na(+)-translocating nadh-quinone reductase subunit e | EQ875_00123 | Not Available | Positive | 130210 - 130806 | 21546.2 |
| na(+)-translocating nadh-quinone reductase subunit f | EQ875_00124 | Not Available | Positive | 130830 - 132053 | 45215.0 |
| fad:protein fmn transferase | EQ875_00125 | Not Available | Positive | 132282 - 133307 | 37805.0 |
| hypothetical protein | EQ875_00126 | Not Available | Positive | 133323 - 133544 | 8010.86 |
| dna polymerase iv | EQ875_00127 | Not Available | Positive | 133742 - 134821 | 40920.7 |
| cytosol non-specific dipeptidase | EQ875_00128 | Not Available | Negative | 134888 - 136348 | 52684.3 |
| hypothetical protein | EQ875_00129 | Not Available | Negative | 136934 - 137065 | 5011.1 |
| adenine permease adep | EQ875_00130 | Not Available | Positive | 137450 - 138739 | 44888.2 |
| xanthine phosphoribosyltransferase | EQ875_00131 | Not Available | Positive | 138816 - 139274 | 17169.7 |
| hypothetical protein | EQ875_00132 | Not Available | Positive | 139532 - 140797 | 47175.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


