Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_02224 | Not Available | Positive | 2503131 - 2505755 | 95211.0 |
| ribosomal rna small subunit methyltransferase f | EQ875_02225 | Not Available | Positive | 2505885 - 2507315 | 53603.0 |
| hypothetical protein | EQ875_02226 | Not Available | Negative | 2507547 - 2507867 | 12797.4 |
| glycine cleavage system transcriptional activator | EQ875_02227 | Not Available | Negative | 2508112 - 2509026 | 34674.8 |
| hypothetical protein | EQ875_02228 | Not Available | Positive | 2509119 - 2510045 | 34492.5 |
| hypothetical protein | EQ875_02229 | Not Available | Positive | 2510241 - 2510927 | 26468.1 |
| hypothetical protein | EQ875_02230 | Not Available | Positive | 2510924 - 2511769 | 32255.7 |
| hypothetical protein | EQ875_02231 | Not Available | Positive | 2512142 - 2513044 | 33614.3 |
| hypothetical protein | EQ875_02232 | Not Available | Positive | 2513136 - 2513477 | 13415.8 |
| hypothetical protein | EQ875_02233 | Not Available | Negative | 2513639 - 2514466 | 31839.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


