Photobacterium damselae subsp. damselae strain JM-2017 EQ875_137

Motile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Photobacterium

Description

Photobacterium damselae subsp. damselae strain JM-2017 EQ875_137 is a Gram-negative bacterium found in diverse marine environments, including coastal waters, estuaries, and sediments, often associated with seaweeds. This mesophilic organism exhibits mobility, facilitated by the presence of flagella. Genetic analysis indicates that it contains one replicon. This strain is known to infect a variety of hosts, including Homo sapiens, Pancrustacea, Aves, Mollusca, and Cetacea, with specific species such as Alca torda and Tursiops truncatus being noted. In humans, infections caused by this bacterium can lead to serious health issues, including pneumonia, wound infections, necrotizing fasciitis, and skin lesions. It is also associated with hemorrhagic septicemia and chronic suppurative pneumonia, indicating its potential as a significant pathogen in marine and terrestrial ecosystems. The presence of Photobacterium damselae subsp. damselae in various habitats underscores its ecological versatility and its role as a pathogen across different species. Understanding its distribution in marine environments and its pathogenic effects on both wildlife and humans highlights the importance of monitoring this bacterium, particularly in coastal regions where human activities may influence its prevalence and impact.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusPhotobacterium
SpeciesPhotobacterium damselae
Strainsubsp. damselae strain JM-2017 EQ875_137

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangemesophilic
Habitatcoastal waters; estuaries; Marine; oceans; seaweeds; sediments
Biotic relationshipNot Available
Host(s)Homo sapiens, Pancrustacea, Aves
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photobacterium damselae subsp. damselae strain JM-2017 EQ875_137,

Gene Summary

Adenine Count

1300119 bp

Thymine Count

1309868 bp

Guanine Count

908294 bp

Cytosine Count

877454 bp

Genome Length

4406237 bp

Protein-coding Genes

3742 genes

Non-Coding Genes

201 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dihydroorotate dehydrogenase (quinone)EQ875_02214Not AvailableNegative2490115 - 249112836773.6
hypothetical proteinEQ875_02215Not AvailableNegative2491342 - 24914885542.73
aminopeptidase nEQ875_02216Not AvailableNegative2491659 - 249428399542.4
nicotinate phosphoribosyltransferaseEQ875_02217Not AvailablePositive2494584 - 249578345365.6
hypothetical proteinEQ875_02218Not AvailableNegative2495870 - 249653225243.7
tail-specific proteaseEQ875_02219Not AvailableNegative2496724 - 249873375313.4
rna chaperone proqEQ875_02220Not AvailableNegative2498750 - 249938223561.2
free methionine-r-sulfoxide reductaseEQ875_02221Not AvailableNegative2499493 - 249995116718.2
putative multidrug export atp-binding/permease proteinEQ875_02222Not AvailablePositive2500015 - 250184468035.2
inner membrane protein yebsEQ875_02223Not AvailablePositive2501954 - 250314744614.6

Displaying genes 2251 – 2260 of 3926 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Haemorrhagic septicemiaCausesPMC12895208
Skin lesionsCausesPMC12895208
Necrotizing fasciitisCausesPMC12895208
Soft-tissue infectionCausesPMC8231020
Chronic suppurative pneumoniaCausesPMC9796189
Splenic lymphoid depletionCausesPMC9796189
Wound infectionsCausesPMC9796189
Hemorrhagic septicemiaCausesPMC9796189
PneumoniaCausesPMC9796189

Displaying health effects 1 – 9 of 9 in total