Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sensor histidine kinase rcsc | EQ875_02192 | Not Available | Positive | 2466822 - 2468903 | 78417.3 |
| hypothetical protein | EQ875_02195 | Not Available | Negative | 2471930 - 2472586 | 25127.1 |
| hypothetical protein | EQ875_02196 | Not Available | Negative | 2472579 - 2473619 | 39762.4 |
| hypothetical protein | EQ875_02197 | Not Available | Negative | 2473917 - 2474471 | 20161.5 |
| hypothetical protein | EQ875_02198 | Not Available | Positive | 2474582 - 2474833 | 9156.03 |
| hypothetical protein | EQ875_02199 | Not Available | Negative | 2475004 - 2476029 | 38573.8 |
| hypothetical protein | EQ875_02200 | Not Available | Positive | 2476188 - 2476976 | 29656.9 |
| hypothetical protein | EQ875_02201 | Not Available | Positive | 2476966 - 2477403 | 16645.3 |
| hypothetical protein | EQ875_02202 | Not Available | Positive | 2477573 - 2477830 | 9737.76 |
| hypothetical protein | EQ875_02203 | Not Available | Negative | 2477869 - 2478267 | 14056.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


