Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_02172 | Not Available | Negative | 2446740 - 2447096 | 13897.1 |
| thermostable carboxypeptidase 1 | EQ875_02173 | Not Available | Negative | 2447212 - 2448693 | 56078.2 |
| d-alanyl-d-alanine carboxypeptidase daca | EQ875_02174 | Not Available | Positive | 2449030 - 2450205 | 42825.2 |
| hypothetical protein | EQ875_02175 | Not Available | Negative | 2450337 - 2451092 | 28523.6 |
| hypothetical protein | EQ875_02176 | Not Available | Negative | 2451096 - 2452817 | 63312.5 |
| pp_02135 | EQ875_02177 | Not Available | Negative | 2453013 - 2453942 | Not Available |
| hypothetical protein | EQ875_02178 | Not Available | Positive | 2454298 - 2454645 | 12598.2 |
| universal stress protein e | EQ875_02179 | Not Available | Negative | 2454726 - 2455667 | 35193.0 |
| fumarate and nitrate reduction regulatory protein | EQ875_02180 | Not Available | Negative | 2455947 - 2456702 | 28290.4 |
| hypothetical protein | EQ875_02181 | Not Available | Negative | 2456778 - 2457455 | 24327.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


