Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| spermidine/putrescine-binding periplasmic protein | EQ875_02162 | Not Available | Negative | 2436682 - 2437725 | 39314.6 |
| spermidine/putrescine-binding periplasmic protein | EQ875_02163 | Not Available | Negative | 2438097 - 2439134 | 39041.4 |
| inner membrane abc transporter permease protein ydcv | EQ875_02164 | Not Available | Negative | 2439325 - 2440092 | 28068.5 |
| spermidine/putrescine transport system permease protein potb | EQ875_02165 | Not Available | Negative | 2440092 - 2440949 | 32341.1 |
| spermidine/putrescine import atp-binding protein pota | EQ875_02166 | Not Available | Negative | 2440933 - 2442051 | 41666.1 |
| hypothetical protein | EQ875_02167 | Not Available | Positive | 2442496 - 2443317 | 29642.1 |
| hypothetical protein | EQ875_02168 | Not Available | Positive | 2443474 - 2444073 | 22792.1 |
| peptidase t | EQ875_02169 | Not Available | Positive | 2444247 - 2445479 | 44894.5 |
| hypothetical protein | EQ875_02170 | Not Available | Positive | 2445621 - 2446022 | 14818.7 |
| hypothetical protein | EQ875_02171 | Not Available | Positive | 2446013 - 2446687 | 25255.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


