Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_02152 | Not Available | Positive | 2426419 - 2426916 | 19161.7 |
| hypothetical protein | EQ875_02153 | Not Available | Positive | 2426906 - 2427646 | 27112.4 |
| electron transport complex subunit rsxb | EQ875_02154 | Not Available | Positive | 2427938 - 2429596 | 60385.9 |
| chaperone protein tord | EQ875_02155 | Not Available | Positive | 2429615 - 2430217 | 22411.7 |
| hypothetical protein | EQ875_02156 | Not Available | Positive | 2430311 - 2430511 | 7294.58 |
| nitrate reductase | EQ875_02157 | Not Available | Positive | 2430527 - 2433388 | 106845.0 |
| formate dehydrogenase iron-sulfur subunit | EQ875_02158 | Not Available | Positive | 2433400 - 2434023 | 22122.6 |
| hypothetical protein | EQ875_02159 | Not Available | Positive | 2434142 - 2435179 | 39197.0 |
| nad-dependent protein deacylase | EQ875_02160 | Not Available | Positive | 2435390 - 2436106 | 26514.4 |
| hypothetical protein | EQ875_02161 | Not Available | Positive | 2436291 - 2436545 | 8942.66 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


