Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosomal protein s7 | EQ875_02142 | Not Available | Positive | 2415262 - 2415732 | 17687.6 |
| elongation factor g | EQ875_02143 | Not Available | Positive | 2415829 - 2417934 | 77631.1 |
| hypothetical protein | EQ875_02144 | Not Available | Positive | 2418555 - 2419208 | 25055.8 |
| hypothetical protein | EQ875_02145 | Not Available | Positive | 2419350 - 2419709 | 13572.2 |
| hypothetical protein | EQ875_02146 | Not Available | Positive | 2419772 - 2420383 | 23414.5 |
| hypothetical protein | EQ875_02147 | Not Available | Negative | 2420483 - 2421115 | 24704.9 |
| hypothetical protein | EQ875_02148 | Not Available | Negative | 2421237 - 2421746 | 18781.2 |
| hypothetical protein | EQ875_02149 | Not Available | Negative | 2421757 - 2423748 | 74123.1 |
| hypothetical protein | EQ875_02150 | Not Available | Negative | 2424340 - 2425251 | 33551.1 |
| sulfur carrier protein fdhd | EQ875_02151 | Not Available | Negative | 2425267 - 2426163 | 32819.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


