Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_02122 | Not Available | Positive | 2399713 - 2400519 | 30271.9 |
| hypothetical protein | EQ875_02123 | Not Available | Negative | 2400621 - 2400803 | 6874.07 |
| camp-activated global transcriptional regulator crp | EQ875_02124 | Not Available | Negative | 2400961 - 2401593 | 23606.9 |
| protein yhfa | EQ875_02125 | Not Available | Positive | 2401980 - 2402384 | 14105.0 |
| phosphoribulokinase, plasmid | EQ875_02126 | Not Available | Negative | 2402434 - 2403303 | 32739.4 |
| hypothetical protein | EQ875_02127 | Not Available | Negative | 2403436 - 2403651 | 8201.75 |
| hypothetical protein | EQ875_02128 | Not Available | Negative | 2403698 - 2404693 | 37323.9 |
| putative abc transporter atp-binding protein yhes | EQ875_02129 | Not Available | Negative | 2404845 - 2406773 | 73225.5 |
| glutathione-regulated potassium-efflux system ancillary protein kefg | EQ875_02130 | Not Available | Positive | 2407001 - 2407582 | 22184.7 |
| glutathione-regulated potassium-efflux system protein kefc | EQ875_02131 | Not Available | Positive | 2407572 - 2409392 | 66053.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


