Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cell division protein damx | EQ875_02112 | Not Available | Positive | 2386964 - 2388472 | 55863.1 |
| dna adenine methylase | EQ875_02113 | Not Available | Positive | 2388580 - 2389422 | 32197.2 |
| ribulose-phosphate 3-epimerase | EQ875_02114 | Not Available | Positive | 2389750 - 2390424 | 24789.1 |
| phosphoglycolate phosphatase | EQ875_02115 | Not Available | Positive | 2390424 - 2391113 | 25162.3 |
| tryptophan--trna ligase | EQ875_02116 | Not Available | Positive | 2391211 - 2392233 | 37653.1 |
| hypothetical protein | EQ875_02117 | Not Available | Positive | 2392491 - 2394836 | 86435.0 |
| anthranilate synthase component 2 | EQ875_02118 | Not Available | Positive | 2394935 - 2395519 | 21296.7 |
| succinylornithine transaminase/acetylornithine aminotransferase | EQ875_02119 | Not Available | Positive | 2395867 - 2397084 | 43850.6 |
| arginine n-succinyltransferase | EQ875_02120 | Not Available | Positive | 2397189 - 2398208 | 38011.5 |
| n-succinylglutamate 5-semialdehyde dehydrogenase | EQ875_02121 | Not Available | Positive | 2398219 - 2399682 | 52731.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


