Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hybrid peroxiredoxin hyprx5 | EQ875_02102 | Not Available | Negative | 2375895 - 2376623 | 26587.6 |
| hydrogen peroxide-inducible genes activator | EQ875_02103 | Not Available | Positive | 2376783 - 2377682 | 33267.7 |
| penicillin-binding protein 1a | EQ875_02104 | Not Available | Negative | 2377770 - 2380343 | 94609.9 |
| hypothetical protein | EQ875_02105 | Not Available | Positive | 2380494 - 2381492 | 37014.7 |
| hypothetical protein | EQ875_02106 | Not Available | Positive | 2381489 - 2382130 | 24034.2 |
| hypothetical protein | EQ875_02107 | Not Available | Positive | 2382127 - 2382717 | 22700.8 |
| hypothetical protein | EQ875_02108 | Not Available | Positive | 2382726 - 2383241 | 19119.2 |
| type iv pilus biogenesis and competence protein pilq | EQ875_02109 | Not Available | Positive | 2383241 - 2384992 | 63703.2 |
| shikimate kinase 1 | EQ875_02110 | Not Available | Positive | 2385277 - 2385840 | 21179.4 |
| 3-dehydroquinate synthase | EQ875_02111 | Not Available | Positive | 2385870 - 2386949 | 38843.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


