Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_02092 | Not Available | Positive | 2361871 - 2363049 | 43858.1 |
| met repressor | EQ875_02093 | Not Available | Negative | 2363199 - 2363516 | 12073.2 |
| cystathionine gamma-synthase | EQ875_02094 | Not Available | Positive | 2363762 - 2364967 | 43098.3 |
| hypothetical protein | EQ875_02095 | Not Available | Negative | 2365044 - 2365610 | 21875.9 |
| phosphoenolpyruvate carboxylase | EQ875_02096 | Not Available | Negative | 2365979 - 2368609 | 98442.1 |
| n-acetyl-gamma-glutamyl-phosphate reductase | EQ875_02097 | Not Available | Positive | 2369194 - 2370207 | 36272.6 |
| acetylglutamate kinase | EQ875_02098 | Not Available | Positive | 2370217 - 2370999 | 26800.8 |
| argininosuccinate synthase | EQ875_02099 | Not Available | Positive | 2371077 - 2372288 | 44320.4 |
| argininosuccinate lyase | EQ875_02100 | Not Available | Positive | 2372391 - 2374268 | 69490.6 |
| dihydrolipoyl dehydrogenase | EQ875_02101 | Not Available | Negative | 2374362 - 2375813 | 52613.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


