Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cell division protein zapb | EQ875_02082 | Not Available | Positive | 2352235 - 2352501 | 10117.0 |
| regulator of ribonuclease activity a | EQ875_02083 | Not Available | Negative | 2352588 - 2353073 | 17336.3 |
| 1,4-dihydroxy-2-naphthoate octaprenyltransferase | EQ875_02084 | Not Available | Negative | 2353198 - 2354112 | 32277.1 |
| atp-dependent protease atpase subunit hslu | EQ875_02085 | Not Available | Negative | 2354253 - 2355584 | 49925.9 |
| atp-dependent protease subunit hslv | EQ875_02086 | Not Available | Negative | 2355595 - 2356122 | 19087.9 |
| cell division protein ftsn | EQ875_02087 | Not Available | Negative | 2356262 - 2357125 | 31999.2 |
| hth-type transcriptional repressor cytr | EQ875_02088 | Not Available | Negative | 2357292 - 2358296 | 36495.2 |
| primosomal protein n' | EQ875_02089 | Not Available | Negative | 2358508 - 2360748 | 83367.4 |
| 50s ribosomal protein l31 | EQ875_02090 | Not Available | Positive | 2360954 - 2361166 | 7760.22 |
| hypothetical protein | EQ875_02091 | Not Available | Negative | 2361231 - 2361374 | 5175.46 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


