Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulatory protein cpxr | EQ875_02072 | Not Available | Negative | 2341894 - 2342583 | 26065.7 |
| hypothetical protein | EQ875_02073 | Not Available | Positive | 2342774 - 2343259 | 18536.4 |
| atp-dependent 6-phosphofructokinase isozyme 1 | EQ875_02074 | Not Available | Positive | 2343856 - 2344818 | 34690.0 |
| triosephosphate isomerase | EQ875_02075 | Not Available | Negative | 2344933 - 2345703 | 26979.1 |
| hypothetical protein | EQ875_02076 | Not Available | Negative | 2345950 - 2346279 | 12502.3 |
| flavodoxin/ferredoxin--nadp reductase | EQ875_02077 | Not Available | Negative | 2346370 - 2347110 | 27598.9 |
| hypothetical protein | EQ875_02078 | Not Available | Negative | 2347120 - 2347740 | 23808.5 |
| fructose-1,6-bisphosphatase 1 class 2 | EQ875_02079 | Not Available | Negative | 2347903 - 2348910 | 36152.9 |
| glycerol kinase | EQ875_02080 | Not Available | Negative | 2349166 - 2350677 | 55101.5 |
| glycerol uptake facilitator protein | EQ875_02081 | Not Available | Negative | 2350781 - 2351632 | 29561.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


