Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipid a biosynthesis myristoyltransferase | EQ875_02062 | Not Available | Negative | 2331940 - 2332890 | 36398.0 |
| hypothetical protein | EQ875_02063 | Not Available | Positive | 2333062 - 2333703 | 25050.9 |
| murein hydrolase activator envc | EQ875_02064 | Not Available | Negative | 2333768 - 2334964 | 44105.1 |
| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | EQ875_02065 | Not Available | Negative | 2334973 - 2336514 | 55755.1 |
| putative protein yibn | EQ875_02066 | Not Available | Positive | 2336923 - 2337363 | 16121.6 |
| protein-export protein secb | EQ875_02067 | Not Available | Positive | 2337456 - 2337923 | 17163.2 |
| glycerol-3-phosphate dehydrogenase | EQ875_02068 | Not Available | Positive | 2337947 - 2338963 | 35971.2 |
| serine acetyltransferase | EQ875_02069 | Not Available | Positive | 2339095 - 2339916 | 29323.4 |
| trna (cytidine(34)-2'-o)-methyltransferase | EQ875_02070 | Not Available | Negative | 2339975 - 2340439 | 17438.9 |
| sensor histidine kinase cpxa | EQ875_02071 | Not Available | Negative | 2340533 - 2341894 | 51834.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


