Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-deoxy-d-manno-octulosonic acid transferase | EQ875_02052 | Not Available | Negative | 2321948 - 2323240 | 47837.1 |
| hypothetical protein | EQ875_02053 | Not Available | Positive | 2323383 - 2324438 | 40529.4 |
| hypothetical protein | EQ875_02054 | Not Available | Positive | 2324438 - 2325208 | 29089.9 |
| hypothetical protein | EQ875_02055 | Not Available | Negative | 2325245 - 2326210 | 37336.0 |
| hypothetical protein | EQ875_02056 | Not Available | Negative | 2326207 - 2326935 | 27988.1 |
| hypothetical protein | EQ875_02057 | Not Available | Negative | 2326932 - 2328524 | 60845.2 |
| hypothetical protein | EQ875_02058 | Not Available | Negative | 2328515 - 2328895 | 14370.3 |
| glycosyltransferase gtf1 | EQ875_02059 | Not Available | Negative | 2328916 - 2329995 | 40025.2 |
| hypothetical protein | EQ875_02060 | Not Available | Negative | 2329998 - 2330747 | 29033.0 |
| hypothetical protein | EQ875_02061 | Not Available | Negative | 2330744 - 2331940 | 45256.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


