Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae strain JM-2017 EQ875_137 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1300119 bp
Thymine Count
1309868 bp
Guanine Count
908294 bp
Cytosine Count
877454 bp
Genome Length
4406237 bp
Protein-coding Genes
3742 genes
Non-Coding Genes
201 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | EQ875_00103 | Not Available | Positive | 109203 - 111290 | 79918.3 |
| 1-deoxy-d-xylulose-5-phosphate synthase | EQ875_00104 | Not Available | Negative | 111409 - 113274 | 68215.5 |
| farnesyl diphosphate synthase | EQ875_00105 | Not Available | Negative | 113299 - 114201 | 32746.2 |
| exodeoxyribonuclease 7 small subunit | EQ875_00106 | Not Available | Negative | 114191 - 114433 | 8947.44 |
| chemotaxis protein poma | EQ875_00107 | Not Available | Positive | 114673 - 115434 | 27424.1 |
| hypothetical protein | EQ875_00108 | Not Available | Positive | 115444 - 116388 | 34803.3 |
| trna sulfurtransferase | EQ875_00109 | Not Available | Positive | 116562 - 118010 | 54375.4 |
| protein/nucleic acid deglycase 3 | EQ875_00110 | Not Available | Negative | 118149 - 118766 | 21693.2 |
| 2-dehydropantoate 2-reductase | EQ875_00111 | Not Available | Negative | 118759 - 119658 | 34153.9 |
| nucleoside-specific channel-forming protein tsx | EQ875_00112 | Not Available | Negative | 119820 - 120623 | 30004.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |


